save omop vocabulary parquet file from provided location to local package cache — omop_vocab_table_save • omopcept

default using UCLH github repo, option to use local files

Usage

omop_vocab_table_save(
  tablename = "concept",
  from = NULL,
  to = tools::R_user_dir("omopcept", which = "cache"),
  download_max_secs = 720
)

Arguments

tablename: which omop table to download, defaults to 'concept'
from: url of file source location, defaults to UCLH filestore
to: path to save file locally, defaults to package cache which is where omopcept functions look
download_max_secs: max download secounds, default 720 = 12 mins

Value

nothing

See also

omop_vocabs_preprocess() alternative that reads in csvs downloaded from Athena and saves to parquet also in local package cache